PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101274.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 506aa    MW: 54882.7 Da    PI: 9.4953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k F r  nL+ H r H
  XP_009101274.1  82 FICDVCKKGFQREQNLQLHRRGH 104
                     89*******************88 PP

2zf-C2H212.70.00037158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_009101274.1 158 WKCDKCSKRYAVQSDWKAHSKTC 180
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-481104IPR007087Zinc finger, C2H2
SuperFamilySSF576672.38E-781104No hitNo description
Gene3DG3DSA:3.30.160.606.2E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.61682104IPR007087Zinc finger, C2H2
SMARTSM003550.01482104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035565123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-5145179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-7153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSSSSYNTSV VPSSSSTQPF FITGSSAGDN AFDRKDTFMS MVQQPNSSAP QPKKRRNQPG  60
NPNPDAEVAA LSPTTQMATN RFICDVCKKG FQREQNLQLH RRGHNLPWKL KQKSTKEVKR  120
KVYICPEPTC VHHDPARALG DLTGVKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QETARNPTVS FTSMTAASSG AGFRGFHGRL  240
EGGNALSHHH LSDHPNSGFS SFGGYNLNIA SSENSRDFAP QTSNPNFLVQ SQGMLTQPNN  300
NNNDQSFMNQ QGLIQFDPVN NINLKSSTTN NSFFNLGFFQ ENTKNSETAI PSLYSTDSLV  360
HHREESLNAG SNVSATALLQ KATQLGSITS NDPSALFRGL ASSSNSSSVV VNDFGGGQIM  420
GNDNNGNLQG LMNSLVAVNG GGAGGSGGNI FNVDFGNNNV NMSGSDNLTL DFLGVGGMVR  480
NVNRGGAGRG RVRGDVSLNG ELKFPE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177330.0AK117733.1 Arabidopsis thaliana At2g02080 mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL17-41-L01.
GenBankBT0058970.0BT005897.1 Arabidopsis thaliana At2g02080 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101274.10.0PREDICTED: zinc finger protein MAGPIE
RefseqXP_009101275.10.0PREDICTED: zinc finger protein MAGPIE
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0D3DAB20.0A0A0D3DAB2_BRAOL; Uncharacterized protein
STRINGBra024833.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4